Rosetta Workshop 2011

Below are the updated tutorials from the Rosetta Workshop, held in March 2011 at Vanderbilt University. These tutorials are based on the Rosetta 3.2.1 release version. These tutorials were covered during a 2-day hands-on workshop which included PowerPoint presentations of each topic and step-by-step instructions on working examples for ab initio folding, comparative modeling, loop building, clustering, ligand docking and protein docking.

Introduction to Rosetta:

Tutorial 1: Rosetta Energy Function

• Presentation (pdf)
• Presenter: Steven Combs

Tutorial 2: Is this Model Good ?

• Presentation (pdf)
• Presenter: Steven Combs

Tutorial 3: Preparing Your Structure

• Presentation (pdf)
• Presenter: Steven Combs

Tutorial 4: Common File Formats in Rosetta

• Presentation (pdf)
• Presenter: Steven Combs

Tutorial 5: Your Rosetta First Application

• Presentation (pdf)
• Presenter: Steven Combs

Rosetta Application Tutorials:

Tutorial 1: Folding

• Presentation (pdf)
• Tutorials (pdf)
• Presenter: Stephanie Hirst

Tutorial 2: Rosetta Ligand-Docking

• Tutorials (pdf)
• Presenter: Gordon Lemmon

Tutorial 3: Comparative Modeling, Loop Building and Clustering

• Presentation (pdf)
• Tutorials (pdf)
• Presenter: Liz Dong

Tutorial 4: Protein-Protein Docking

• Presentation (pdf)
• Tutorials (pdf)
• Presenter: Jordan Willis

Tutorial 5: Rosetta Enzyme Design

• Tutorials (pdf)
• Presenter: Steven Combs

Additional Files from Workshop:

Tutorial 1: Associated Scripts for Rosetta 3.2 Tutorials

• Materials (zip)
• Presenter: Sam Deluca

Tutorial 2: Complete Rosetta Tutorial Files and Scripts

• Materials (zip)